University of Sheffield
Task 1
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Event Class gold (match) answer (match) recall prec. fscore
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Gene_expression 619 ( 385) 451 ( 385) 62.20 85.37 71.96
Transcription 101 ( 34) 75 ( 34) 33.66 45.33 38.64
Protein_catabolism 14 ( 8) 15 ( 8) 57.14 53.33 55.17
Localization 99 ( 23) 27 ( 23) 23.23 85.19 36.51
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=[SIMPLE ALL]= 833 ( 450) 568 ( 450) 54.02 79.23 64.24
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Binding 333 ( 105) 224 ( 105) 31.53 46.88 37.70
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Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Phosphorylation 160 ( 76) 82 ( 76) 47.50 92.68 62.81
Ubiquitination 30 ( 0) 0 ( 0) 0.00 0.00 0.00
Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[PROT-MOD ALL]= 191 ( 76) 82 ( 76) 39.79 92.68 55.68
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Regulation 288 ( 33) 77 ( 33) 11.46 42.86 18.08
Positive_regulation 1130 ( 268) 500 ( 268) 23.72 53.60 32.88
Negative_regulation 526 ( 110) 203 ( 110) 20.91 54.19 30.18
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=[REGULATION ALL]= 1944 ( 411) 780 ( 411) 21.14 52.69 30.18
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==[EVENT TOTAL]== 3301 ( 1042) 1654 ( 1042) 31.57 63.00 42.06
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Event Class gold (match) answer (match) recall prec. fscore
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Gene_expression 619 ( 386) 450 ( 386) 62.36 85.78 72.22
Transcription 101 ( 37) 75 ( 37) 36.63 49.33 42.05
Protein_catabolism 14 ( 8) 15 ( 8) 57.14 53.33 55.17
Localization 99 ( 23) 27 ( 23) 23.23 85.19 36.51
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=[SIMPLE ALL]= 833 ( 454) 567 ( 454) 54.50 80.07 64.86
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Binding 333 ( 105) 224 ( 105) 31.53 46.88 37.70
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Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Phosphorylation 160 ( 76) 82 ( 76) 47.50 92.68 62.81
Ubiquitination 30 ( 0) 0 ( 0) 0.00 0.00 0.00
Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[PROT-MOD ALL]= 191 ( 76) 82 ( 76) 39.79 92.68 55.68
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Regulation 288 ( 33) 77 ( 33) 11.46 42.86 18.08
Positive_regulation 1130 ( 268) 500 ( 268) 23.72 53.60 32.88
Negative_regulation 526 ( 110) 203 ( 110) 20.91 54.19 30.18
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=[REGULATION ALL]= 1944 ( 411) 780 ( 411) 21.14 52.69 30.18
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==[EVENT TOTAL]== 3301 ( 1046) 1653 ( 1046) 31.69 63.28 42.23
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Event Class gold (match) answer (match) recall prec. fscore
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Gene_expression 619 ( 396) 450 ( 389) 63.97 86.44 73.53
Transcription 101 ( 38) 71 ( 38) 37.62 53.52 44.19
Protein_catabolism 14 ( 8) 15 ( 8) 57.14 53.33 55.17
Localization 99 ( 24) 26 ( 23) 24.24 88.46 38.06
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=[SIMPLE ALL]= 833 ( 466) 562 ( 458) 55.94 81.49 66.34
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Binding 333 ( 108) 224 ( 107) 32.43 47.77 38.63
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Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Phosphorylation 160 ( 76) 82 ( 76) 47.50 92.68 62.81
Ubiquitination 30 ( 0) 0 ( 0) 0.00 0.00 0.00
Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[PROT-MOD ALL]= 191 ( 76) 82 ( 76) 39.79 92.68 55.68
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Regulation 288 ( 35) 77 ( 34) 12.15 44.16 19.06
Positive_regulation 1130 ( 280) 500 ( 278) 24.78 55.60 34.28
Negative_regulation 526 ( 115) 203 ( 113) 21.86 55.67 31.40
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=[REGULATION ALL]= 1944 ( 430) 780 ( 425) 22.12 54.49 31.47
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==[EVENT TOTAL]== 3301 ( 1080) 1648 ( 1066) 32.72 64.68 43.46
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Event-Arg Type gold (match) answer (match) recall prec. fscore
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Theme-Gene_expression 619 ( 385) 451 ( 385) 62.20 85.37 71.96
Theme-Transcription 101 ( 34) 75 ( 34) 33.66 45.33 38.64
Theme-Protein_catabolism 14 ( 8) 15 ( 8) 57.14 53.33 55.17
Theme-Binding 418 ( 185) 262 ( 185) 44.26 70.61 54.41
Theme-Localization 99 ( 23) 27 ( 23) 23.23 85.19 36.51
Theme-Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Phosphorylation 160 ( 78) 82 ( 78) 48.75 95.12 64.46
Theme-Ubiquitination 25 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Regulation 257 ( 41) 77 ( 41) 15.95 53.25 24.55
Theme-Positive_regulation 1068 ( 321) 501 ( 321) 30.06 64.07 40.92
Theme-Negative_regulation 490 ( 143) 204 ( 143) 29.18 70.10 41.21
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=[THEME ALL]= 3252 ( 1218) 1694 ( 1218) 37.45 71.90 49.25
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Cause-Regulation 103 ( 7) 13 ( 7) 6.80 53.85 12.07
Cause-Positive_regulation 337 ( 18) 35 ( 18) 5.34 51.43 9.68
Cause-Negative_regulation 122 ( 9) 17 ( 9) 7.38 52.94 12.95
Cause-Protein_modification 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Phosphorylation 2 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Ubiquitination 8 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[CAUSE ALL]= 572 ( 34) 65 ( 34) 5.94 52.31 10.68
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==[PRIMARY ARG TOTAL]== 3824 ( 1252) 1759 ( 1252) 32.74 71.18 44.85
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Event-Arg Type gold (match) answer (match) recall prec. fscore
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Theme-Gene_expression 619 ( 386) 450 ( 386) 62.36 85.78 72.22
Theme-Transcription 101 ( 37) 75 ( 37) 36.63 49.33 42.05
Theme-Protein_catabolism 14 ( 8) 15 ( 8) 57.14 53.33 55.17
Theme-Binding 418 ( 186) 261 ( 186) 44.50 71.26 54.79
Theme-Localization 99 ( 23) 27 ( 23) 23.23 85.19 36.51
Theme-Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Phosphorylation 160 ( 78) 82 ( 78) 48.75 95.12 64.46
Theme-Ubiquitination 25 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Regulation 257 ( 41) 77 ( 41) 15.95 53.25 24.55
Theme-Positive_regulation 1068 ( 321) 501 ( 321) 30.06 64.07 40.92
Theme-Negative_regulation 490 ( 144) 204 ( 144) 29.39 70.59 41.50
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=[THEME ALL]= 3252 ( 1224) 1692 ( 1224) 37.64 72.34 49.51
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Cause-Regulation 103 ( 7) 13 ( 7) 6.80 53.85 12.07
Cause-Positive_regulation 337 ( 18) 35 ( 18) 5.34 51.43 9.68
Cause-Negative_regulation 122 ( 9) 17 ( 9) 7.38 52.94 12.95
Cause-Protein_modification 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Phosphorylation 2 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Ubiquitination 8 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[CAUSE ALL]= 572 ( 34) 65 ( 34) 5.94 52.31 10.68
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==[PRIMARY ARG TOTAL]== 3824 ( 1258) 1757 ( 1258) 32.90 71.60 45.08
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Event-Arg Type gold (match) answer (match) recall prec. fscore
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Theme-Gene_expression 619 ( 396) 450 ( 389) 63.97 86.44 73.53
Theme-Transcription 101 ( 38) 71 ( 38) 37.62 53.52 44.19
Theme-Protein_catabolism 14 ( 8) 15 ( 8) 57.14 53.33 55.17
Theme-Binding 418 ( 205) 254 ( 192) 49.04 75.59 59.49
Theme-Localization 99 ( 24) 26 ( 23) 24.24 88.46 38.06
Theme-Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Phosphorylation 160 ( 78) 82 ( 78) 48.75 95.12 64.46
Theme-Ubiquitination 25 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Regulation 257 ( 43) 77 ( 42) 16.73 54.55 25.61
Theme-Positive_regulation 1068 ( 340) 498 ( 332) 31.84 66.67 43.09
Theme-Negative_regulation 490 ( 149) 204 ( 146) 30.41 71.57 42.68
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=[THEME ALL]= 3252 ( 1281) 1677 ( 1248) 39.39 74.42 51.51
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Cause-Regulation 103 ( 7) 13 ( 7) 6.80 53.85 12.07
Cause-Positive_regulation 337 ( 21) 35 ( 21) 6.23 60.00 11.29
Cause-Negative_regulation 122 ( 9) 17 ( 9) 7.38 52.94 12.95
Cause-Protein_modification 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Phosphorylation 2 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Ubiquitination 8 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[CAUSE ALL]= 572 ( 37) 65 ( 37) 6.47 56.92 11.62
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==[PRIMARY ARG TOTAL]== 3824 ( 1318) 1742 ( 1285) 34.47 73.77 46.98
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Task 2
N/A
N/A
N/A
Task 3
N/A
N/A
N/A
Thank you for your participation!!