Ho Chi Minh City University of Science
Task 1
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Event Class gold (match) answer (match) recall prec. fscore
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Gene_expression 619 ( 483) 790 ( 483) 78.03 61.14 68.56
Transcription 101 ( 10) 65 ( 10) 9.90 15.38 12.05
Protein_catabolism 14 ( 9) 17 ( 9) 64.29 52.94 58.06
Localization 99 ( 32) 61 ( 32) 32.32 52.46 40.00
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=[SIMPLE ALL]= 833 ( 534) 933 ( 534) 64.11 57.23 60.48
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Binding 333 ( 129) 478 ( 129) 38.74 26.99 31.81
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Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Phosphorylation 160 ( 124) 215 ( 124) 77.50 57.67 66.13
Ubiquitination 30 ( 0) 0 ( 0) 0.00 0.00 0.00
Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[PROT-MOD ALL]= 191 ( 124) 215 ( 124) 64.92 57.67 61.08
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Regulation 288 ( 28) 274 ( 28) 9.72 10.22 9.96
Positive_regulation 1130 ( 216) 1149 ( 216) 19.12 18.80 18.96
Negative_regulation 526 ( 126) 489 ( 126) 23.95 25.77 24.83
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=[REGULATION ALL]= 1944 ( 370) 1912 ( 370) 19.03 19.35 19.19
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==[EVENT TOTAL]== 3301 ( 1157) 3538 ( 1157) 35.05 32.70 33.84
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Event Class gold (match) answer (match) recall prec. fscore
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Gene_expression 619 ( 488) 790 ( 488) 78.84 61.77 69.27
Transcription 101 ( 33) 65 ( 33) 32.67 50.77 39.76
Protein_catabolism 14 ( 9) 17 ( 9) 64.29 52.94 58.06
Localization 99 ( 32) 61 ( 32) 32.32 52.46 40.00
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=[SIMPLE ALL]= 833 ( 562) 933 ( 562) 67.47 60.24 63.65
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Binding 333 ( 129) 478 ( 129) 38.74 26.99 31.81
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Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Phosphorylation 160 ( 124) 215 ( 124) 77.50 57.67 66.13
Ubiquitination 30 ( 0) 0 ( 0) 0.00 0.00 0.00
Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[PROT-MOD ALL]= 191 ( 124) 215 ( 124) 64.92 57.67 61.08
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Regulation 288 ( 28) 274 ( 28) 9.72 10.22 9.96
Positive_regulation 1130 ( 225) 1149 ( 225) 19.91 19.58 19.75
Negative_regulation 526 ( 128) 489 ( 128) 24.33 26.18 25.22
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=[REGULATION ALL]= 1944 ( 381) 1912 ( 381) 19.60 19.93 19.76
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==[EVENT TOTAL]== 3301 ( 1196) 3538 ( 1196) 36.23 33.80 34.98
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Event Class gold (match) answer (match) recall prec. fscore
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Gene_expression 619 ( 495) 767 ( 491) 79.97 64.02 71.11
Transcription 101 ( 33) 65 ( 33) 32.67 50.77 39.76
Protein_catabolism 14 ( 9) 17 ( 9) 64.29 52.94 58.06
Localization 99 ( 33) 60 ( 32) 33.33 53.33 41.03
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=[SIMPLE ALL]= 833 ( 570) 909 ( 565) 68.43 62.16 65.14
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Binding 333 ( 137) 469 ( 137) 41.14 29.21 34.16
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Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Phosphorylation 160 ( 127) 207 ( 125) 79.38 60.39 68.59
Ubiquitination 30 ( 0) 0 ( 0) 0.00 0.00 0.00
Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[PROT-MOD ALL]= 191 ( 127) 207 ( 125) 66.49 60.39 63.29
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Regulation 288 ( 29) 274 ( 28) 10.07 10.22 10.14
Positive_regulation 1130 ( 255) 1134 ( 253) 22.57 22.31 22.44
Negative_regulation 526 ( 143) 484 ( 141) 27.19 29.13 28.13
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=[REGULATION ALL]= 1944 ( 427) 1892 ( 422) 21.97 22.30 22.13
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==[EVENT TOTAL]== 3301 ( 1261) 3477 ( 1249) 38.20 35.92 37.03
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Event-Arg Type gold (match) answer (match) recall prec. fscore
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Theme-Gene_expression 619 ( 483) 790 ( 483) 78.03 61.14 68.56
Theme-Transcription 101 ( 10) 65 ( 10) 9.90 15.38 12.05
Theme-Protein_catabolism 14 ( 9) 17 ( 9) 64.29 52.94 58.06
Theme-Binding 418 ( 255) 542 ( 255) 61.00 47.05 53.12
Theme-Localization 99 ( 32) 61 ( 32) 32.32 52.46 40.00
Theme-Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Phosphorylation 160 ( 128) 215 ( 128) 80.00 59.53 68.27
Theme-Ubiquitination 25 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Regulation 257 ( 46) 276 ( 46) 17.90 16.67 17.26
Theme-Positive_regulation 1068 ( 274) 1157 ( 274) 25.66 23.68 24.63
Theme-Negative_regulation 490 ( 163) 484 ( 163) 33.27 33.68 33.47
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=[THEME ALL]= 3252 ( 1400) 3607 ( 1400) 43.05 38.81 40.82
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Cause-Regulation 103 ( 4) 19 ( 4) 3.88 21.05 6.56
Cause-Positive_regulation 337 ( 26) 110 ( 26) 7.72 23.64 11.63
Cause-Negative_regulation 122 ( 10) 67 ( 10) 8.20 14.93 10.58
Cause-Protein_modification 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Phosphorylation 2 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Ubiquitination 8 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[CAUSE ALL]= 572 ( 40) 196 ( 40) 6.99 20.41 10.42
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==[PRIMARY ARG TOTAL]== 3824 ( 1440) 3803 ( 1440) 37.66 37.86 37.76
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Event-Arg Type gold (match) answer (match) recall prec. fscore
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Theme-Gene_expression 619 ( 488) 790 ( 488) 78.84 61.77 69.27
Theme-Transcription 101 ( 33) 65 ( 33) 32.67 50.77 39.76
Theme-Protein_catabolism 14 ( 9) 17 ( 9) 64.29 52.94 58.06
Theme-Binding 418 ( 255) 542 ( 255) 61.00 47.05 53.12
Theme-Localization 99 ( 32) 61 ( 32) 32.32 52.46 40.00
Theme-Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Phosphorylation 160 ( 128) 215 ( 128) 80.00 59.53 68.27
Theme-Ubiquitination 25 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Regulation 257 ( 46) 276 ( 46) 17.90 16.67 17.26
Theme-Positive_regulation 1068 ( 284) 1157 ( 284) 26.59 24.55 25.53
Theme-Negative_regulation 490 ( 169) 484 ( 169) 34.49 34.92 34.70
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=[THEME ALL]= 3252 ( 1444) 3607 ( 1444) 44.40 40.03 42.11
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Cause-Regulation 103 ( 5) 19 ( 5) 4.85 26.32 8.20
Cause-Positive_regulation 337 ( 27) 110 ( 27) 8.01 24.55 12.08
Cause-Negative_regulation 122 ( 10) 67 ( 10) 8.20 14.93 10.58
Cause-Protein_modification 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Phosphorylation 2 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Ubiquitination 8 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[CAUSE ALL]= 572 ( 42) 196 ( 42) 7.34 21.43 10.94
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==[PRIMARY ARG TOTAL]== 3824 ( 1486) 3803 ( 1486) 38.86 39.07 38.97
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Event-Arg Type gold (match) answer (match) recall prec. fscore
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Theme-Gene_expression 619 ( 495) 767 ( 491) 79.97 64.02 71.11
Theme-Transcription 101 ( 33) 65 ( 33) 32.67 50.77 39.76
Theme-Protein_catabolism 14 ( 9) 17 ( 9) 64.29 52.94 58.06
Theme-Binding 418 ( 280) 523 ( 272) 66.99 52.01 58.55
Theme-Localization 99 ( 33) 60 ( 32) 33.33 53.33 41.03
Theme-Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Phosphorylation 160 ( 131) 207 ( 129) 81.88 62.32 70.77
Theme-Ubiquitination 25 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Regulation 257 ( 47) 276 ( 46) 18.29 16.67 17.44
Theme-Positive_regulation 1068 ( 337) 1138 ( 330) 31.55 29.00 30.22
Theme-Negative_regulation 490 ( 187) 477 ( 185) 38.16 38.78 38.47
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=[THEME ALL]= 3252 ( 1552) 3530 ( 1527) 47.72 43.26 45.38
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Cause-Regulation 103 ( 5) 19 ( 5) 4.85 26.32 8.20
Cause-Positive_regulation 337 ( 28) 110 ( 28) 8.31 25.45 12.53
Cause-Negative_regulation 122 ( 11) 67 ( 11) 9.02 16.42 11.64
Cause-Protein_modification 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Phosphorylation 2 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Ubiquitination 8 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[CAUSE ALL]= 572 ( 44) 196 ( 44) 7.69 22.45 11.46
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==[PRIMARY ARG TOTAL]== 3824 ( 1596) 3726 ( 1571) 41.74 42.16 41.95
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Task 2
N/A
N/A
N/A
Task 3
N/A
N/A
N/A
Thank you for your participation!!