NCBI
Task 1
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Event Class gold (match) answer (match) recall prec. fscore
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Gene_expression 619 ( 473) 644 ( 473) 76.41 73.45 74.90
Transcription 101 ( 61) 132 ( 61) 60.40 46.21 52.36
Protein_catabolism 14 ( 11) 24 ( 11) 78.57 45.83 57.89
Localization 99 ( 39) 47 ( 39) 39.39 82.98 53.42
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=[SIMPLE ALL]= 833 ( 584) 847 ( 584) 70.11 68.95 69.52
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Binding 333 ( 123) 299 ( 123) 36.94 41.14 38.92
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Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Phosphorylation 160 ( 120) 156 ( 120) 75.00 76.92 75.95
Ubiquitination 30 ( 4) 5 ( 4) 13.33 80.00 22.86
Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[PROT-MOD ALL]= 191 ( 124) 161 ( 124) 64.92 77.02 70.45
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Regulation 288 ( 39) 84 ( 39) 13.54 46.43 20.97
Positive_regulation 1130 ( 251) 518 ( 251) 22.21 48.46 30.46
Negative_regulation 526 ( 112) 265 ( 112) 21.29 42.26 28.32
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=[REGULATION ALL]= 1944 ( 402) 867 ( 402) 20.68 46.37 28.60
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==[EVENT TOTAL]== 3301 ( 1233) 2174 ( 1233) 37.35 56.72 45.04
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Event Class gold (match) answer (match) recall prec. fscore
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Gene_expression 619 ( 495) 641 ( 495) 79.97 77.22 78.57
Transcription 101 ( 63) 131 ( 63) 62.38 48.09 54.31
Protein_catabolism 14 ( 11) 24 ( 11) 78.57 45.83 57.89
Localization 99 ( 39) 47 ( 39) 39.39 82.98 53.42
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=[SIMPLE ALL]= 833 ( 608) 843 ( 608) 72.99 72.12 72.55
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Binding 333 ( 125) 299 ( 125) 37.54 41.81 39.56
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Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Phosphorylation 160 ( 120) 156 ( 120) 75.00 76.92 75.95
Ubiquitination 30 ( 4) 5 ( 4) 13.33 80.00 22.86
Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[PROT-MOD ALL]= 191 ( 124) 161 ( 124) 64.92 77.02 70.45
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Regulation 288 ( 40) 84 ( 40) 13.89 47.62 21.51
Positive_regulation 1130 ( 297) 516 ( 297) 26.28 57.56 36.09
Negative_regulation 526 ( 144) 265 ( 144) 27.38 54.34 36.41
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=[REGULATION ALL]= 1944 ( 481) 865 ( 481) 24.74 55.61 34.25
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==[EVENT TOTAL]== 3301 ( 1338) 2168 ( 1338) 40.53 61.72 48.93
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Event Class gold (match) answer (match) recall prec. fscore
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Gene_expression 619 ( 504) 638 ( 497) 81.42 77.90 79.62
Transcription 101 ( 65) 128 ( 65) 64.36 50.78 56.77
Protein_catabolism 14 ( 11) 24 ( 11) 78.57 45.83 57.89
Localization 99 ( 42) 46 ( 39) 42.42 84.78 56.55
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=[SIMPLE ALL]= 833 ( 622) 836 ( 612) 74.67 73.21 73.93
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Binding 333 ( 131) 298 ( 130) 39.34 43.62 41.37
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Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Phosphorylation 160 ( 122) 156 ( 121) 76.25 77.56 76.90
Ubiquitination 30 ( 4) 5 ( 4) 13.33 80.00 22.86
Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[PROT-MOD ALL]= 191 ( 126) 161 ( 125) 65.97 77.64 71.33
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Regulation 288 ( 42) 84 ( 41) 14.58 48.81 22.46
Positive_regulation 1130 ( 302) 514 ( 300) 26.73 58.37 36.66
Negative_regulation 526 ( 149) 264 ( 146) 28.33 55.30 37.46
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=[REGULATION ALL]= 1944 ( 493) 862 ( 487) 25.36 56.50 35.01
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==[EVENT TOTAL]== 3301 ( 1372) 2157 ( 1354) 41.56 62.77 50.01
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Event-Arg Type gold (match) answer (match) recall prec. fscore
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Theme-Gene_expression 619 ( 473) 644 ( 473) 76.41 73.45 74.90
Theme-Transcription 101 ( 61) 132 ( 61) 60.40 46.21 52.36
Theme-Protein_catabolism 14 ( 11) 24 ( 11) 78.57 45.83 57.89
Theme-Binding 418 ( 207) 321 ( 207) 49.52 64.49 56.02
Theme-Localization 99 ( 39) 47 ( 39) 39.39 82.98 53.42
Theme-Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Phosphorylation 160 ( 128) 156 ( 128) 80.00 82.05 81.01
Theme-Ubiquitination 25 ( 5) 5 ( 5) 20.00 100.00 33.33
Theme-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Regulation 257 ( 48) 83 ( 48) 18.68 57.83 28.24
Theme-Positive_regulation 1068 ( 307) 508 ( 307) 28.75 60.43 38.96
Theme-Negative_regulation 490 ( 144) 266 ( 144) 29.39 54.14 38.10
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=[THEME ALL]= 3252 ( 1423) 2186 ( 1423) 43.76 65.10 52.34
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Cause-Regulation 103 ( 7) 9 ( 7) 6.80 77.78 12.50
Cause-Positive_regulation 337 ( 21) 66 ( 21) 6.23 31.82 10.42
Cause-Negative_regulation 122 ( 9) 20 ( 9) 7.38 45.00 12.68
Cause-Protein_modification 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Phosphorylation 2 ( 0) 4 ( 0) 0.00 0.00 0.00
Cause-Ubiquitination 8 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[CAUSE ALL]= 572 ( 37) 99 ( 37) 6.47 37.37 11.03
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==[PRIMARY ARG TOTAL]== 3824 ( 1460) 2285 ( 1460) 38.18 63.89 47.80
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Event-Arg Type gold (match) answer (match) recall prec. fscore
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Theme-Gene_expression 619 ( 495) 641 ( 495) 79.97 77.22 78.57
Theme-Transcription 101 ( 63) 131 ( 63) 62.38 48.09 54.31
Theme-Protein_catabolism 14 ( 11) 24 ( 11) 78.57 45.83 57.89
Theme-Binding 418 ( 211) 316 ( 211) 50.48 66.77 57.49
Theme-Localization 99 ( 39) 47 ( 39) 39.39 82.98 53.42
Theme-Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Phosphorylation 160 ( 128) 156 ( 128) 80.00 82.05 81.01
Theme-Ubiquitination 25 ( 5) 5 ( 5) 20.00 100.00 33.33
Theme-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Regulation 257 ( 49) 83 ( 49) 19.07 59.04 28.82
Theme-Positive_regulation 1068 ( 349) 508 ( 349) 32.68 68.70 44.29
Theme-Negative_regulation 490 ( 177) 266 ( 177) 36.12 66.54 46.83
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=[THEME ALL]= 3252 ( 1527) 2177 ( 1527) 46.96 70.14 56.25
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Cause-Regulation 103 ( 7) 9 ( 7) 6.80 77.78 12.50
Cause-Positive_regulation 337 ( 47) 66 ( 47) 13.95 71.21 23.33
Cause-Negative_regulation 122 ( 12) 20 ( 12) 9.84 60.00 16.90
Cause-Protein_modification 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Phosphorylation 2 ( 0) 4 ( 0) 0.00 0.00 0.00
Cause-Ubiquitination 8 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[CAUSE ALL]= 572 ( 66) 99 ( 66) 11.54 66.67 19.67
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==[PRIMARY ARG TOTAL]== 3824 ( 1593) 2276 ( 1593) 41.66 69.99 52.23
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Event-Arg Type gold (match) answer (match) recall prec. fscore
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Theme-Gene_expression 619 ( 504) 638 ( 497) 81.42 77.90 79.62
Theme-Transcription 101 ( 65) 128 ( 65) 64.36 50.78 56.77
Theme-Protein_catabolism 14 ( 11) 24 ( 11) 78.57 45.83 57.89
Theme-Binding 418 ( 236) 314 ( 224) 56.46 71.34 63.03
Theme-Localization 99 ( 42) 46 ( 39) 42.42 84.78 56.55
Theme-Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Phosphorylation 160 ( 130) 156 ( 129) 81.25 82.69 81.96
Theme-Ubiquitination 25 ( 5) 5 ( 5) 20.00 100.00 33.33
Theme-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Regulation 257 ( 51) 83 ( 50) 19.84 60.24 29.85
Theme-Positive_regulation 1068 ( 360) 504 ( 356) 33.71 70.63 45.64
Theme-Negative_regulation 490 ( 182) 265 ( 178) 37.14 67.17 47.83
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=[THEME ALL]= 3252 ( 1586) 2163 ( 1554) 48.77 71.84 58.10
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Cause-Regulation 103 ( 7) 9 ( 7) 6.80 77.78 12.50
Cause-Positive_regulation 337 ( 47) 64 ( 47) 13.95 73.44 23.44
Cause-Negative_regulation 122 ( 12) 20 ( 12) 9.84 60.00 16.90
Cause-Protein_modification 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Phosphorylation 2 ( 0) 4 ( 0) 0.00 0.00 0.00
Cause-Ubiquitination 8 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[CAUSE ALL]= 572 ( 66) 97 ( 66) 11.54 68.04 19.73
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==[PRIMARY ARG TOTAL]== 3824 ( 1652) 2260 ( 1620) 43.20 71.68 53.91
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Task 2
N/A
N/A
N/A
Task 3
N/A
N/A
N/A
Thank you for your participation!!