University of Zurich
Task 1
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Event Class gold (match) answer (match) recall prec. fscore
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Gene_expression 619 ( 400) 497 ( 400) 64.62 80.48 71.68
Transcription 101 ( 26) 100 ( 26) 25.74 26.00 25.87
Protein_catabolism 14 ( 10) 15 ( 10) 71.43 66.67 68.97
Localization 99 ( 34) 39 ( 34) 34.34 87.18 49.28
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=[SIMPLE ALL]= 833 ( 470) 651 ( 470) 56.42 72.20 63.34
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Binding 333 ( 74) 264 ( 74) 22.22 28.03 24.79
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Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Phosphorylation 160 ( 119) 168 ( 119) 74.38 70.83 72.56
Ubiquitination 30 ( 0) 0 ( 0) 0.00 0.00 0.00
Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[PROT-MOD ALL]= 191 ( 119) 168 ( 119) 62.30 70.83 66.30
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Regulation 288 ( 23) 84 ( 23) 7.99 27.38 12.37
Positive_regulation 1130 ( 129) 444 ( 129) 11.42 29.05 16.39
Negative_regulation 526 ( 54) 166 ( 54) 10.27 32.53 15.61
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=[REGULATION ALL]= 1944 ( 206) 694 ( 206) 10.60 29.68 15.62
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==[EVENT TOTAL]== 3301 ( 869) 1777 ( 869) 26.33 48.90 34.23
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Event Class gold (match) answer (match) recall prec. fscore
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Gene_expression 619 ( 406) 497 ( 406) 65.59 81.69 72.76
Transcription 101 ( 52) 97 ( 52) 51.49 53.61 52.53
Protein_catabolism 14 ( 10) 15 ( 10) 71.43 66.67 68.97
Localization 99 ( 34) 39 ( 34) 34.34 87.18 49.28
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=[SIMPLE ALL]= 833 ( 502) 648 ( 502) 60.26 77.47 67.79
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Binding 333 ( 74) 264 ( 74) 22.22 28.03 24.79
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Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Phosphorylation 160 ( 119) 168 ( 119) 74.38 70.83 72.56
Ubiquitination 30 ( 0) 0 ( 0) 0.00 0.00 0.00
Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[PROT-MOD ALL]= 191 ( 119) 168 ( 119) 62.30 70.83 66.30
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Regulation 288 ( 23) 84 ( 23) 7.99 27.38 12.37
Positive_regulation 1130 ( 136) 444 ( 136) 12.04 30.63 17.28
Negative_regulation 526 ( 56) 165 ( 56) 10.65 33.94 16.21
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=[REGULATION ALL]= 1944 ( 215) 693 ( 215) 11.06 31.02 16.31
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==[EVENT TOTAL]== 3301 ( 910) 1773 ( 910) 27.57 51.33 35.87
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Event Class gold (match) answer (match) recall prec. fscore
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Gene_expression 619 ( 414) 493 ( 409) 66.88 82.96 74.06
Transcription 101 ( 54) 97 ( 54) 53.47 55.67 54.55
Protein_catabolism 14 ( 10) 15 ( 10) 71.43 66.67 68.97
Localization 99 ( 37) 39 ( 34) 37.37 87.18 52.32
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=[SIMPLE ALL]= 833 ( 515) 644 ( 507) 61.82 78.73 69.26
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Binding 333 ( 82) 263 ( 80) 24.62 30.42 27.22
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Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Phosphorylation 160 ( 119) 164 ( 119) 74.38 72.56 73.46
Ubiquitination 30 ( 0) 0 ( 0) 0.00 0.00 0.00
Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[PROT-MOD ALL]= 191 ( 119) 164 ( 119) 62.30 72.56 67.04
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Regulation 288 ( 25) 82 ( 25) 8.68 30.49 13.51
Positive_regulation 1130 ( 157) 437 ( 155) 13.89 35.47 19.97
Negative_regulation 526 ( 57) 163 ( 57) 10.84 34.97 16.55
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=[REGULATION ALL]= 1944 ( 239) 682 ( 237) 12.29 34.75 18.16
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==[EVENT TOTAL]== 3301 ( 955) 1753 ( 943) 28.93 53.79 37.63
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Event-Arg Type gold (match) answer (match) recall prec. fscore
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Theme-Gene_expression 619 ( 400) 497 ( 400) 64.62 80.48 71.68
Theme-Transcription 101 ( 26) 100 ( 26) 25.74 26.00 25.87
Theme-Protein_catabolism 14 ( 10) 15 ( 10) 71.43 66.67 68.97
Theme-Binding 418 ( 161) 264 ( 161) 38.52 60.98 47.21
Theme-Localization 99 ( 34) 39 ( 34) 34.34 87.18 49.28
Theme-Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Phosphorylation 160 ( 123) 168 ( 123) 76.88 73.21 75.00
Theme-Ubiquitination 25 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Regulation 257 ( 36) 84 ( 36) 14.01 42.86 21.11
Theme-Positive_regulation 1068 ( 170) 441 ( 170) 15.92 38.55 22.53
Theme-Negative_regulation 490 ( 83) 166 ( 83) 16.94 50.00 25.30
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=[THEME ALL]= 3252 ( 1043) 1774 ( 1043) 32.07 58.79 41.50
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Cause-Regulation 103 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Positive_regulation 337 ( 6) 22 ( 6) 1.78 27.27 3.34
Cause-Negative_regulation 122 ( 0) 1 ( 0) 0.00 0.00 0.00
Cause-Protein_modification 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Phosphorylation 2 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Ubiquitination 8 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[CAUSE ALL]= 572 ( 6) 23 ( 6) 1.05 26.09 2.02
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==[PRIMARY ARG TOTAL]== 3824 ( 1049) 1797 ( 1049) 27.43 58.38 37.32
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Event-Arg Type gold (match) answer (match) recall prec. fscore
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Theme-Gene_expression 619 ( 406) 497 ( 406) 65.59 81.69 72.76
Theme-Transcription 101 ( 52) 97 ( 52) 51.49 53.61 52.53
Theme-Protein_catabolism 14 ( 10) 15 ( 10) 71.43 66.67 68.97
Theme-Binding 418 ( 161) 263 ( 161) 38.52 61.22 47.28
Theme-Localization 99 ( 34) 39 ( 34) 34.34 87.18 49.28
Theme-Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Phosphorylation 160 ( 123) 168 ( 123) 76.88 73.21 75.00
Theme-Ubiquitination 25 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Regulation 257 ( 36) 84 ( 36) 14.01 42.86 21.11
Theme-Positive_regulation 1068 ( 178) 441 ( 178) 16.67 40.36 23.59
Theme-Negative_regulation 490 ( 88) 165 ( 88) 17.96 53.33 26.87
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=[THEME ALL]= 3252 ( 1088) 1769 ( 1088) 33.46 61.50 43.34
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Cause-Regulation 103 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Positive_regulation 337 ( 6) 22 ( 6) 1.78 27.27 3.34
Cause-Negative_regulation 122 ( 0) 1 ( 0) 0.00 0.00 0.00
Cause-Protein_modification 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Phosphorylation 2 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Ubiquitination 8 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[CAUSE ALL]= 572 ( 6) 23 ( 6) 1.05 26.09 2.02
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==[PRIMARY ARG TOTAL]== 3824 ( 1094) 1792 ( 1094) 28.61 61.05 38.96
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Event-Arg Type gold (match) answer (match) recall prec. fscore
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Theme-Gene_expression 619 ( 414) 493 ( 409) 66.88 82.96 74.06
Theme-Transcription 101 ( 54) 97 ( 54) 53.47 55.67 54.55
Theme-Protein_catabolism 14 ( 10) 15 ( 10) 71.43 66.67 68.97
Theme-Binding 418 ( 182) 259 ( 174) 43.54 67.18 52.84
Theme-Localization 99 ( 37) 39 ( 34) 37.37 87.18 52.32
Theme-Protein_modification 1 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Phosphorylation 160 ( 123) 164 ( 123) 76.88 75.00 75.93
Theme-Ubiquitination 25 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Theme-Regulation 257 ( 38) 82 ( 38) 14.79 46.34 22.42
Theme-Positive_regulation 1068 ( 202) 428 ( 197) 18.91 46.03 26.81
Theme-Negative_regulation 490 ( 89) 163 ( 89) 18.16 54.60 27.26
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=[THEME ALL]= 3252 ( 1149) 1740 ( 1128) 35.33 64.83 45.74
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Cause-Regulation 103 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Positive_regulation 337 ( 9) 22 ( 8) 2.67 36.36 4.98
Cause-Negative_regulation 122 ( 0) 1 ( 0) 0.00 0.00 0.00
Cause-Protein_modification 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Phosphorylation 2 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Ubiquitination 8 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Acetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
Cause-Deacetylation 0 ( 0) 0 ( 0) 0.00 0.00 0.00
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=[CAUSE ALL]= 572 ( 9) 23 ( 8) 1.57 34.78 3.01
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==[PRIMARY ARG TOTAL]== 3824 ( 1158) 1763 ( 1136) 30.28 64.44 41.20
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Task 2
N/A
N/A
N/A
Task 3
N/A
N/A
N/A
Thank you for your participation!!